印度谷螟转录组测序及功能注释分析

    Transcriptome Sequencing and Functional Annotation Analysis of Grain Stored Pests, Plodia Interpunctella(Hübener)

    • 摘要: 印度谷螟Plodia interpunctella(Hübener)是我国危害较严重的仓储害虫,食性广,发生普遍。为有效开发印度谷螟基因资源,采用Illumina Hi Seq 2500平台对印度谷螟进行转录组测序,同时对原始数据进行过滤、组装及生物信息学分析。经序列拼接后获得116 399条Unigenes,平均长度为1 079 bp。利用7大公共数据库比对后,成功注释63 679条Unigenes,其中有45 225条Unigenes与GO数据库中基因具有相似性,按功能可将其分成细胞组分、分子功能和生物过程3大类,55亚类;有24 658条Unigenes被注释到KOG数据库,根据功能将其分为26类;有34 202条Unigenes被注释到KEGG代谢通路中,分属于5类代谢通路;经SSR分析后获得31 301个SSR标记。本研究成功获得了印度谷螟转录组数据,为进一步研究印度谷螟的基因功能,分析挖掘其关键基因,功能验证及分子标记开发等研究提供了丰富的基础数据。

       

      Abstract: The Indian meal moth, Plodia interpunctella (Hübner) (Lepidoptera:Pyralidae) is a destructive polyphagous storage pest and causes infestations in a wide array of commodities.In order to establish a transcriptome database of the Indian meal moth, Illumina Hi Seq 2500 platform was used to sequence the transcriptome of P.interpunctella, and the raw sequence data reads were filtered and assembled, and bioinformatics analysis was also carried out.The results showed that 116 399 unigenes with the mean lengths of 1 079 bp was acquired.Through a similarity search against seven public databases, 63 799 unigenes were annotated.According to GO category, a total of 45, 225 unigenes divided into 55 subclass were mapped to three GO groups:biological process, cellular component, and molecular function;a total of 24 658 unigenes were classified to 26 KOG categories;34 202 unigenes were divided into five KEGG functional categories.The microsatellite(SSR) analysis indicated that a total of 3 101 SSR markers were detected.This study obtained the transcriptome data of P.interpunctella, which can provide a foundation for the further study of gene functions, and functional analysis of olfactory genes and development of molecular markers in P.interpunctella.

       

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