基于分子生物信息学分析小麦球蛋白的理化特性与结构预测

    Analysis of Physicochemical Properties and Structure Prediction of Wheat Globulins on Molecular Bioinformatics

    • 摘要: 为探讨小麦球蛋白在理化特性及分子结构方面的共性与特性,基于NCBI蛋白质数据库,利用Protparam、Clustalw、MEME program3、PSIPRED 3.3等软件对8条小麦球蛋白的理化性质、多序列比对、系统进化树、保守基序、蛋白质二级结构、域结构、折叠域识别等进行预测分析。结果表明:小麦球蛋白的氨基酸残基数为225~637,分子质量为24.55~72.25 kDa,理论等电点为5.22~8.72,总平均亲水性为-1.074~0.045,不稳定系数为36.02~77.64,脂肪系数为57.05~96.09。在多序列比对方面,小麦球蛋白存在较多保守区域;在基序分析方面,小麦球蛋白中有6个保守的基序;在结构预测方面,小麦球蛋白的域结构和折叠域差异较小;在蛋白质二级结构方面,氨基酸残基在225~241之间的小麦球蛋白由α-螺旋和无规则卷曲等结构元件组成,基本上不存在延伸链;氨基酸残基在504~637之间的小麦球蛋白则由α-螺旋、延伸链和无规则卷曲等结构元件组成,且三者的比例约为无规则卷曲∶延伸链∶α-螺旋=3∶1∶1。这些结果可为小麦球蛋白的分离纯化及其利用提供生物学数据参考。

       

      Abstract: In order to explore the commonness and characteristics of wheat globulins in physicochemical properties and molecular structures,the physicochemical properties,multiple sequence alignments phylogenetic trees,conserved motifs,protein folding domain recognition and protein secondary structures of eight wheat globulins were analyzed by bioinformatics softwares including Protparam,Clustalw,MEME program3,and PSIPRED version 3.3 based on the existing NCBI protein database in present study. The results showed that the amino acid numbers of analyzed proteins ranged from 225 to 637 aa. The molecular weight distribution varied from 24.55 to 72.25 kDa. The theoretical isoelectric points were range of 5.22 to 8.72. The average hydrophilicities were the scope of -1.774 to 0.045. The coefficients of instability were varying from 36.02 to 77.64. The fat coefficients were the extent of 57.05 to 96.09. There were some conserved regions in multiple sequence alignments of wheat globulins,and six very conserved motifs in wheat globulins. The domain structure and folding domain structure of wheat globulins were less different. The secondary structures of wheat globulins(225~241 aa) were mainly composed of α-helices and random coils,and nearly nonexistent extended chains.However,the secondary structures of long wheat globulins (504~637 aa) were composed of α-helices,extended chains and random coils,as well as the ratio of the random coils,extended chains and α-helices was approximately 3:1:1. These results could provide biological data reference for the isolation,purification and utilization of wheat globulins.

       

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